WebFeb 6, 2024 · Estimates both tail area-based false discovery rates (Fdr) as well as local false discovery rates (fdr) for a variety of null models (p-values, z-scores, correlation coefficients, t-scores). The proportion of null values and the parameters of the null distribution are adaptively estimated from the data. In addition, the package contains functions for non … Web使用FitHiC评估染色质交互作用的显著性. 使用TADbit识别拓扑关联结构域. 使用pyGenomeTracks可视化hi-c数据. hi-c辅助基因组组装简介. 文献解读 使用hi-C数据辅助埃及伊蚊基因组的组装. chip_seq数据分析. Chip-seq简介. chip_seq质量评估之计算样本间的相关性
"IndexError: list index out of range" while using --pcatype fithic ...
WebFit-Hi-C is a tool for assigning statistical confidence estimates to contact maps produced by genome-wide genome architecture assays such as Hi-C. - GitHub - ferhatay/fithic: Fit-Hi-C is a tool for assigning statistical confidence estimates to contact maps produced by genome-wide genome architecture assays such as Hi-C. WebDec 12, 2024 · After running hicpro2fithic.py and found that the output file named fragmentMappability.gz is not exactly in the fithic input required format. Here is the screenshot. This file is fragment file for the fithic and the description for this file is I … right ankle dti icd 10
GitHub - ay-lab/FitHiC-1
WebNov 8, 2024 · In FitHiC: Confidence estimation for intra-chromosomal contact maps Introduction. Fit-Hi-C is a tool for assigning statistical confidence estimates to intra … WebNov 14, 2024 · fithic -f fithic.fragmentMappability.gz -i fithic.interactionCounts.gz -t fithic.biases.gz -o fithic_sample2 -l TU-2 -v -x intraOnly -r 40000. Reading the contact counts file to generate bins... Interactions file read. Time took 47.469826459884644 Fragments file read. Time took 0.20023465156555176 Traceback (most recent call last): WebFit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. - fithic/validPairs2FitHiC-fixedSize.sh at master · ay-lab/fithic right ankle degenerative arthritis